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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTGTAGAGCTCTTGCTAAGCGATTAATTGAGCATGGATATAAACTGGTTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttattgttccttctttttgtgtttaacaaaaaaaaaaaaaattagtttccctcttttcttcccctaattcatccattatagatgacatgcttttcaatgtaaaaagacatgattttccatgttgatatatgatccttgttagtaccttggctatgcttcatattaattaacaacacatcctttag

Basic information

species Glycine max
transcript GLYMA13G29410.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298535|gb|FG988506.1|FG988506
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254330688|gb|GR841953.1|GR841953
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58014729|gb|CX701471.1|CX701471
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|4437020|gb|AI522885.1|AI522885
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209726322|gb|BW680234.1|BW680234
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209729808|gb|BW658613.1|BW658613
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGGCTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213593328|gb|DB975696.1|DB975696
EST:     TGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGTTTGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|19052654|gb|BM731321.1|BM731321
EST:     TCTAAGGCCATCT                         GGTCTTGATGGTGCTAGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254346600|gb|GR856322.1|GR856322
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209698391|gb|BW667186.1|BW667186
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|15815903|gb|BI788178.1|BI788178
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|214009429|gb|DB990635.1|DB990635
EST:     TTTCTGAACGTAGTGACAAGCATCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|20075616|gb|BQ094399.1|BQ094399
EST:     CCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58018378|gb|CX705120.1|CX705120
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254335575|gb|GR847103.1|GR847103
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254345540|gb|GR851702.1|GR851702
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254333982|gb|GR848900.1|GR848900
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213597480|gb|DB981648.1|DB981648
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|298170634|gb|HO019258.1|HO019258
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|214009268|gb|DB990600.1|DB990600
EST:     TTCTGGTGGTAGTGACAGT-ATCCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTCTGGTGGTAGTGACAATCA-CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213594872|gb|DB977214.1|DB977214
EST:     TTCTGGTGGTAGTGAC-ATTAGTCTGGTTCTTGTCGATCTAGGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTCTGGTGGTAGTGACAATCA-CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|9819792|gb|BE555305.1|BE555305
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|192301793|gb|FG994445.1|FG994445
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|7591183|gb|AW706921.1|AW706921
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTT
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTT
EST: gi|58023902|gb|CX710643.1|CX710643
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|18735429|gb|BM528760.1|BM528760
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAA-TTCTTGACTTGGCTTCTATA-CC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254346462|gb|GR856184.1|GR856184
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209722222|gb|BW662394.1|BW662394
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209725263|gb|BW672738.1|BW672738
EST:     CGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|10254054|gb|BE821820.1|BE821820
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58014732|gb|CX701474.1|CX701474
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|298186489|gb|HO037122.1|HO037122
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209725542|gb|BW677842.1|BW677842
EST:     CTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACTGTAGAGCTCTTGCTAAGCGATTAATTGAGCATGGATATAAACTGGTTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttattgttccttctttttgtgtttaacaaaaaaaaaaaaaattagtttccctcttttcttcccctaattcatccattatagatgacatgcttttcaatgtaaaaagacatgattttccatgttgatatatgatccttgttagtaccttggctatgcttcatattaattaacaacacatcctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG