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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGgtcagttctgtcagagtgtgtgattcttgtcactgatgattgtgaataccttatattttgcaacctgtttttgtttgctctcatttatttctgccttttgaattttcttctgtgcctaatttgtggtttttctccccag

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 10
GTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGgtcagtt-ctgtcagagtgtgtgattcttgtcactgatgattgtgaataccttatattttgcaacctgtttttgtttgctctcatttatttctgccttttgaattttcttctgtgcctaatttgtggtttttctccccag-----------------------
|||| |||||||||||||||||| ||||||| ||  | |||||||| ||||||||||| || ||||||||||||||||||| ||||| |    |   | |||||  | | |||  |    ||  ||  |       | ||| ||||||| |||    |  |  ||||      | |  |||    |||   |||| |    ||||| |     |                       
GTAAGATGGTTCTTTTGGATAAGCTACTTCCAAAGCTAAAAGAGCGTGATTCTAGGGTTCTAATATTTTCACAGgtcagttgctgtctgga-atcaaaatcttg--agttatgcattcagatgactcctg---cagaccctttttttgtatgcctgtacattattctataacctca--ttttcattgtatttaatgttgtatttttgtggatgggggaccttctatttaaaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345542|gb|GR851704.1|GR851704
EST:     TACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAG                         ATGACTAGGCTACTAGACATACTCGAAGATTATTTAGTGTTTCGTGGATAT
genomic: TACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGgtcagttctg ... ttctccccagATGACTAGGCTACTAGACATACTCGAAGATTATTTAGTGTTTCGTGGATAT
EST: gi|208167495|gb|GD965147.1|GD965147
EST:     TACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAG                         ATGACTAGGCTACTAGACATACTCGAAGATTATTTAGTGTTTCGTGGATAT
genomic: TACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGgtcagttctg ... ttctccccagATGACTAGGCTACTAGACATACTCGAAGATTATTTAGTGTTTCGTGGATAT