1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGgttgggactattaatttcattagttttagatttaaatgctttaattttactttatggtcattttcttaccatataatggaaaataatattgatgcatccg...
species | Glycine max |
transcript | GLYMA13G28460.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCAATTAACAGCCAG GGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTEST: gi|207692174|gb|GD675365.1|GD675365
genomic: AGTTGCAATTAACAGCCAGgttgggacta ... tttgttccagGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGT
EST: AGTTGCAATTAACAGCCAG GGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTEST: gi|193585596|gb|FK539498.1|FK539498
genomic: AGTTGCAATTAACAGCCAGgttgggacta ... tttgttccagGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGT
EST: ATAACAAGCTATCAGTTGCAATTAACAGCCAG GGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGT
genomic: ATAACAAGCTATCAGTTGCAATTAACAGCCAGgttgggacta ... tttgttccagGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGgttgggactattaatttcattagttttagatttaaatgctttaattttactttatggtcattttcttaccatataatggaaaataatattgatgcatccg
GCTGCT
- - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaata