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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAgtatgattttgtagttttacatcaacaacataatatgacttctactgttccctgttgtttacagtgatagataattatataatttttttatttgttatgtccaacccaaatggcag

Basic information

species Glycine max
transcript GLYMA13G26700.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26700.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 3
CTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAgtatgattttgtagttttacatcaacaacataatatgacttctactgttccctgttgtttacagtgatagataattatataatttttttatttgttatgtccaacccaaatggcag
|  | | ||| ||||||||||| || |||||||||||||| |||||  | || || ||||| || |||||| |||||||| | ||||| || || |||||||||| |     ||  | || |||    |||| ||  |   ||    ||  | ||  || | | ||||   | || | | || |||||  |||  |   | |||            
CATCATCCACAGATATTGTGTGCCCCATGTATATGCGTGTCTGGGATGTTGTTAAGATAGCAAAAGATCCATCTGAAACAAGGCCTCTAATTCTTTGCGAgtatgcta----agcatgacctca----catattaataaccct----ttatccgt-attcata-tgatt--tgatgaaagaactttttccttt--tgctttcaag-----------

upper sequence: GLYMA13G26700.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
CTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAgtatgat---tttgtagttttacatcaacaaca-taatatgacttctactg-ttccctgttgtttacagtgatagataatt-atataatttttttatttgttatgtccaacccaaatggcag
|||| |  || |||||||| || || ||||||||||||||||||||||| || || || || || |||||||||||||  || ||| |||| || |||||||||| |   |||  ||||||  ||  |||| | |  | | |  |   |   |||  |  | || ||| ||  |  | |||   |||| | |  |  |    |||| ||||     || |||
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaac-----tgtcag