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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatctttatctcccttgattgctattaaactttaactttcaacaagtgtttatttattgcttttaaacattctgactgggtaattgcttcatacag

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 10
GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatctttatctcccttgattg--ctattaaactttaactttcaacaagtgtttatttattgcttttaaacattctgactgggtaattgcttcatacag
 | ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||  |||||||||| ||||| ||||| ||||| ||  | ||||| ||||||| |   | | |    || |||   |  | |    |  |||    | |    | ||    |||    ||    ||| || | |||    ||||  ||||
CTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttcatcttttttctgtttgatttgcttattgctgccttctccctaaacatcata---tgcccagaagatatctaacagcgta----cttctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753077|gb|AI960364.1|AI960364
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|193681309|gb|FK622023.1|FK622023
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|193417392|gb|FK383868.1|FK383868
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|9903135|gb|BE612103.1|BE612103
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|207835871|gb|GD806554.1|GD806554
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|31308505|gb|CD393708.1|CD393708
EST:     ATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAAATTGCT
genomic: ATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAA-TTGCT
EST: gi|6134862|gb|AW133255.1|AW133255
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|193305382|gb|FK271341.1|FK271341
EST:     CGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGTCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCT
genomic: CGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAG-CACCCAAACTGGTATTGGAACAGCCATTGCAATTGCT
EST: gi|208264750|gb|GE062124.1|GE062124
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|9440042|gb|BE440553.1|BE440553
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|20812531|gb|BQ297009.1|BQ297009
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|19053945|gb|BM732612.1|BM732612
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|7692256|gb|AW760367.1|AW760367
EST:     GTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|17519168|gb|BM188210.1|BM188210
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|9903168|gb|BE612136.1|BE612136
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|193341828|gb|FK308916.1|FK308916
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|5677127|gb|AI938257.1|AI938257
EST:     GAACGTACTGAAACGTGTATTTGGCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|7690957|gb|AW759092.1|AW759092
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|10845091|gb|BF068262.1|BF068262
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|15000011|gb|BI320825.1|BI320825
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|208076403|gb|GD874324.1|GD874324
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|5753079|gb|AI960366.1|AI960366
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|208202709|gb|GE001777.1|GE001777
EST:     TATTATAGTCTTCG                         GTTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCT
genomic: TATTATAGTCTTCGgtaaatatct ... cttcatacagG-TAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCT
EST: gi|23057431|gb|BU578105.1|BU578105
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|6482509|gb|AW201766.1|AW201766
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCACACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|151395328|gb|EV265199.1|EV265199
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
EST: gi|7691830|gb|AW759950.1|AW759950
EST:     GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCG                         GTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatct ... cttcatacagGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTG