Sequence
atgc intronic sequence ATGC exonic sequenceGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAGgttctttgctttctgttgattgtctgacttcttgctgtaaagctgatcaatgtcttgcatacacagactacacatgcccatctttctttgcattgaattgtttcatacacagttttatgttgccttttctttag
Basic information
species | Glycine max |
transcript | GLYMA13G23230.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 5'ss of exon 9
GAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAGgttctttgctttctgttgattgtctgacttcttgctgtaaagctgatcaatgt-cttgcatacacagactacacatgcccatctttctttgcattgaattgtttcatacacagttttatgttgccttttctttag
|| || || || || || ||| |||| |||||||||||||| ||||| || ||| | ||||| ||||||||||||||||| | | ||| | || | || ||| | | || || | || | ||| | | ||||| || | | ||| | || || || | || |||
GAACCACTCTTAAAAATAGAGCTAAACAATCCTGCTTTGCTTGCTGGGAATTGGACACAGCTCTGTGCAACATGCAAGgtacct-gctcaaattccgttttatgtctttcttc----aatcttaacaccatacttaatcatcgatgctacatatttacttgttttggtccactgtgtttcattttattcag----------------------
upper sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 9
GAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAGgt-tctttgctttctgttgattgtctgacttcttgctgtaaagctgatcaatgtcttgcatacacagactacacatgcccatctttctttgcattgaattgtttcatacacagttttatgttgccttttctttag
|| |||||| |||||||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||||||||| |||| ||||| | |||| || ||| || | | | || |||| | ||| || | ||| || ||| | || ||| ||| || ||
GAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAGgtgccttttacttctggtttttgt-tgccttttttgtatgac-ttgttcaacat-ttgtctattctaacttca---gcctgatgtgattcctattcgatttgttattag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814634|gb|BI786909.1|BI786909EST: ATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG ATTGTCAGGCCTCTTCGAGCAAAACACTGTTCTACCTGTGATCATTGTGTG
genomic: ATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAGgttctttgct ... ttttctttagATTGTCAGGCCTCTTCGAGCAAAACACTGTTCTACCTGTGATCATTGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAGgttctttgctttctgttgattgtctgacttcttgctgtaaagctgatcaatgtcttgcatacacagactacacatgcccatctttctttgcattgaattgtttcatacacagttttatgttgccttttctttag
- - - - - - - - - - - - - - - - - - - - - GCTGGA