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GGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGgtatgtatttaaaaaataaactatactgtttcttcttttttagtattttttgaattataatgtcataatctttgtatttttttaattaaccatgtgttattttatcatttgcag
species | Glycine max |
transcript | GLYMA13G21480.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTG GCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAEST: gi|21888649|gb|BQ741862.1|BQ741862
genomic: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGgtatgtattt ... tcatttgcagGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
EST: GCGTAGGCTTGGTATGGCTTATGACGTG GCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAEST: gi|51335181|gb|CO979047.1|CO979047
genomic: GCGTAGGCTTGGTATGGCTTATGACGTGgtatgtattt ... tcatttgcagGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
EST: TATGGCTTATGACGTG GCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAEST: gi|19271170|gb|BM887426.1|BM887426
genomic: TATGGCTTATGACGTGgtatgtattt ... tcatttgcagGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
EST: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTG GCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAEST: gi|51344716|gb|CO985449.1|CO985449
genomic: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGgtatgtattt ... tcatttgcagGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
EST: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTG GCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
genomic: CCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGgtatgtattt ... tcatttgcagGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGgtatgtatttaaaaaataaactatactgtttcttcttttttagtattttttgaattataatgtcataatctttgtatttttttaattaaccatgtgttattttatcatttgcag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG