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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATGGACTACGTTTTTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcattaattagcagatctgaaggcctgcagttttggtttttaagttttaatttgttatgtattttgacttttttcctattgtcctattgattag

Basic information

species Glycine max
transcript GLYMA13G20780.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6071740|gb|AW101127.1|AW101127
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|10845490|gb|BF071116.1|BF071116
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|17518725|gb|BM187767.1|BM187767
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|5688475|gb|AI941490.1|AI941490
EST:     TTGTTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|6502176|gb|AW203549.1|AW203549
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|9440259|gb|BE440768.1|BE440768
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|209697661|gb|BW655508.1|BW655508
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|151404672|gb|EV274486.1|EV274486
EST:     T-GGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAG-CTGGGAG                         ACTGATAATGTTGAGGAAAT
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAAT
EST: gi|9902652|gb|BE611559.1|BE611559
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|151405163|gb|EV274977.1|EV274977
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|10232664|gb|BE801552.1|BE801552
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|21602656|gb|BQ612987.1|BQ612987
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|15287897|gb|BI471788.1|BI471788
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|308098710|gb|HO760451.1|HO760451
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|15199748|gb|BI423990.1|BI423990
EST:     TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: TTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
EST: gi|208293408|gb|GE095104.1|GE095104
EST:     GGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG                         ACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA
genomic: GGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcatta ... tattgattagACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATATGGACTACGTTTTTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGgtaatcattaattagcagatctgaaggcctgcagttttggtttttaagttttaatttgttatgtattttgacttttttcctattgtcctattgattag

- - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA