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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgttttacttgatgcttctttcttatttggaatatatagatttaactgtccgttccttgaattttatctactgtag

Basic information

species Glycine max
transcript GLYMA13G19450.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 5'ss of exon 9
ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgttttacttgatgcttctttcttatttggaatatatagatttaactgtccgttccttgaa--ttttatctactgtag--------------------
|||||||||       ||| | | || |||||||| ||||||||||| ||||| || ||||||||||| || |||||||| ||| ||| |   | |  ||  |||   |    |    ||    | ||    ||| || ||  |    | |||   ||  |                     
ATTGGAGGAGTGCCTATCAAAATAGGAGGAATGGCCAAAGGTTCTGGGATGATTCATCCAAATATGGCAACAATGCTTGGTgtaagttctgtatcaatctcattttccacacagtcc-tactcctctattgatccctttctcaaggcatgtatgagcttcattataaccctttttcttacag

upper sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttt-acttgatgcttctttcttatttggaatatatagatttaactgtccgttccttgaattttatctactgtag
|||||||||       | ||| | || || ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||   ||     | |||   |||  |      |   |  |   |  ||  | |     | |||| ||||||  ||
ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctcaggttcccccttcctctattgaggcatgtagcaaagtttgatggcc-atttttttctactacag

upper sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgttttacttgatgcttctttcttatttggaatatatagatttaactgtccgttccttga---attttatctactgtag
 ||||||| || ||  | |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||  || |   ||         | ||  | || ||  || | |||    |  |  || |||||      |  | |  |  ||
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16277400|gb|BI942360.1|BI942360
EST:     TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG                         GTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
genomic: TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttta ... tctactgtagGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
EST: gi|16281999|gb|BI944782.1|BI944782
EST:     TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG                         GTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
genomic: TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttta ... tctactgtagGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
EST: gi|16277260|gb|BI942288.1|BI942288
EST:     TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG                         GTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
genomic: TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttta ... tctactgtagGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
EST: gi|192294186|gb|FG986275.1|FG986275
EST:     TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG                         GTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG
genomic: TGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttta ... tctactgtagGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTG