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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataatatttttcccatagcttttacctttttagttcttcatatctatctgaaatactttttcctggctatacaaatttgtgcttgtgtagtgta...

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 10
AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataatattttt---cccatagcttttacctttttagttct-tcatatctatctgaaatactttttcctggctatacaaat-ttgtgcttgtgtagtgta
|||| ||  | || |   | ||||||||  |||| ||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||||  |  | ||   | |||||   | ||  | |||||| | | |||| ||| | | |||          |   || || | || || |    | |    
AAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattcttctcttttactcatagtcatgacaatattagttatattatatatatat-atatataaccataaagtggtataagtattatgttgtctttg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207813078|gb|GD785012.1|GD785012
EST:     GTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: GTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|13562965|gb|BG551185.1|BG551185
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|208052461|gb|GD851758.1|GD851758
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|10252718|gb|BE820484.1|BE820484
EST:     NGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|208254159|gb|GE051629.1|GE051629
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|193542811|gb|FK504132.1|FK504132
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|193429123|gb|FK393217.1|FK393217
EST:     TTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: TTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
EST: gi|151407111|gb|EV276926.1|EV276926
EST:     AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG                         GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATT