1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaataattctttatggctaccttgcaggtttgaatgatcgtttttgctggatatctgttcatttaacattatcttgttattag
species | Glycine max |
transcript | GLYMA13G15140.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|58019711|gb|CX706453.1|CX706453
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GCCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCC-AG ATTTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGEST: gi|207719852|gb|GD703037.1|GD703037
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagA-TTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGG
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|21257124|gb|BQ454012.1|BQ454012
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|7691802|gb|AW759923.1|AW759923
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|207811405|gb|GD783466.1|GD783466
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|6913068|gb|AW394598.1|AW394598
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|9204637|gb|BE330861.1|BE330861
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGAEST: gi|151393115|gb|EV262990.1|EV262990
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAG-TTGAGGAEST: gi|207836039|gb|GD807394.1|GD807394
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGA
EST: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAG ATTCGAAACTATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGG
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaat ... ttgttattagATTCGAAAC-ATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaataattctttatggctaccttgcaggtttgaatgatcgtttttgctggatatctgttcatttaacattatcttgttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG