Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacataaggcccttctttcagctctgtggactacattgatttatatgaaccaatgaataccaaaataaagtttgtcacatacagcatttaggccttatctgtgacctaaatcgaaaattttcaatcatatgtgcag

Basic information

species Glycine max
transcript GLYMA13G10530.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303877|gb|FG998229.1|FG998229
EST:     GACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGCCCCATCCTGTTTAAGAATTTGAA
genomic: GACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacata ... atatgtgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
EST: gi|58024671|gb|CX711412.1|CX711412
EST:     GATGATAGACCTGGTGCACCAATAATAAGTTTCAG                         TGATGCATCATTTGG-TATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
genomic: GATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacata ... atatgtgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
EST: gi|57576024|gb|CX548995.1|CX548995
EST:     GATGATAGACCTGGTGCACCAATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
genomic: GATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacata ... atatgtgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
EST: gi|208055506|gb|GD853271.1|GD853271
EST:     CACCAATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
genomic: CACCAATAATAAGTTTCAGgtagaacata ... atatgtgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA
EST: gi|208061301|gb|GD857993.1|GD857993
EST:     GACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAG                         TGATGCATCATTTGGTTATCCTGGGG-CCCCATTCTGTTTAAGAATTTGAA
genomic: GACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacata ... atatgtgcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGgtagaacataaggcccttctttcagctctgtggactacattgatttatatgaaccaatgaataccaaaataaagtttgtcacatacagcatttaggccttatctgtgacctaaatcgaaaattttcaatcatatgtgcag

- - - - - - - - - - -  CAGATG