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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTTTGTTGGGTCTAGTATATGCTGCAGTGACACCTGCTGTTCTTCCTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagatgtaaaatttatagtgaacagatcaatgatgattgaagtttatatgcacgtttatgattctggtgccagtgccattaatcattcgttaaaa...

Basic information

species Glycine max
transcript GLYMA13G10490.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10490.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
GTACTTTTTGTTGGGTCTAGTATATGCTGCAGTGACACCTGCTGTTCTTCCTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagatgtaaaatttatagtgaa----cagat-caatgatgattgaagtttatatgcacgtttatgattctggtgccagtgccattaatcattcgttaaaa
 || |||||  |||| || || |||||||  |||||||| |   | |||||||||||||| ||||||||| ||||||| ||| | || ||||| ||||||||| | || ||  |  || ||  | ||     | ||  || |   | | | | ||   |||||    ||   ||  |      |    | ||||     ||    
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaagttgacattttgattataaaatcttaaatataaagggtaatcaggattgagtgcacaaacatc-ctcaagaatgcctattttcaatccaatatt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208055805|gb|GD854156.1|GD854156
EST:     CTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAG                         ATCATTAACGTTTATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagat ... ccaaatgcagATCATTAACGTTTATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT
EST: gi|207802256|gb|GD773038.1|GD773038
EST:     CTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAG                         ATCATTAACGTTTATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGgtacagagat ... ccaaatgcagATCATTAACGTTTATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCT