Sequence
atgc intronic sequence ATGC exonic sequenceATAAATGCTGTAGTGTATTATTCAACTTCTGTGTTCCGTAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagtatttttattcttaaaaatgtttattgtgcattcagtaaaagaaggttattgtatatgttccacaaacatgatattttttctgattgaagttttattttgcag
Basic information
species | Glycine max |
transcript | GLYMA13G07780.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G07780.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g04190.1 (Oryza sativa), 5'ss of exon 10
ATAAATGCTGTAGTGTATTATTCAACTTCTGTGTTCCGTAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagtatttttattcttaaaaatgtttattgtgcattcagtaaaagaaggttattgtatatgttccacaaacatgatattttttctgattgaagttttattttgcag
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ATAAATGCTGTTGTATATTACTCTACATCGGTGTTCCGCAGTGCAGGCATTGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagt----ccatgcttagaaag---tattctagaatcaattttgaaatggcctttctgatggtatatata----------tttctgatag----------------
upper sequence: GLYMA13G07780.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G153704_T07 (Zea mays), 5'ss of exon 8
ATAAATGCTGTAGTGTATTATTCAACTTCTGTGTTCCGTAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagt--atttttattcttaaaaatgtttattgtgcattcagtaaaagaaggttattgtatatgttccacaaacatgatattttttctgattgaagttttattttgcag
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ATAAACGCTGTTGTATATTACTCTACATCGGTGTTCCGTAGTGCAGGCATTGCATCTGATGTTGCTGCTAGTGCTCTTGTTGGAGCAGCCAATGTTTTTGgtaagtttacttttattagtaataagattt----taatatcaattagagaag--tacagaatatgttttctgacggcggt-tattatttactcatag-------------
upper sequence: GLYMA13G07780.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 10
ATAAATGCTGTAGTGTATTATTCAACTTCTGTGTTCCGTAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagtatttttattcttaaaaatgtttattgtgcattcagtaaaagaaggttattgtatatgttccacaaacatgatattttttctgattgaagttttattttgcag
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ATAAATGCTGTGGTGTACTATTCAACATCTGTGTTCCGCAGTGCTGGAATTGCTTCTGATGTTGCAGCCAGTGCTCTTGTTGGGGCATCAAATGTCTTTGgtaatcctttttattctctctgatttcttgtaaaattttgatttcatact-ttgtagagaatgttttacatgactggattttgatcttcttacag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192325905|gb|FK016582.1|FK016582EST: TGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTG GAACTTGTATTGCTTCCTCCTTAATGGACAAACAAGGAAGGAAAAGTCTCC
genomic: TGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagtattt ... tattttgcagGAACTTGTATTGCTTCCTCCTTAATGGACAAACAAGGAAGGAAAAGTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAATGCTGTAGTGTATTATTCAACTTCTGTGTTCCGTAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCCTTGGTTGGCGCATCAAATGTTTTTGgttagtatttttattcttaaaaatgtttattgtgcattcagtaaaagaaggttattgtatatgttccacaaacatgatattttttctgattgaagttttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG