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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctcttttctgcttacttacattttgtaacttactgtgaatgtttgtagtaattcaggatttaggttaaatttgcttatgctaattcattgcct...

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 10
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctcttttctgcttacttacattttgtaac-ttactgtgaatgtttgta-gtaattcaggatttaggttaaatttgcttatgctaattcattgcct--
|||||||| |||||||| ||||| ||||| ||||||||||| || || || || || || || || || || || ||  ||||||| |||||||||||  |||||         | ||  |  |  || ||  |   |||     || |||  || ||  ||     ||  | || |  | | || ||||  |   ||  
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgt--attctgcccatccttgacaaaactaatgcaatatcgatgtccgatttggtacatacttttgggacaggg--agatcttttaacgcaaattactatgctgt

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G138676_T01 (Zea mays), 5'ss of exon 10
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgt--tcattctcttttctgcttacttacattttgtaac-ttactgtgaa---tgtttgtagtaattcaggatttaggttaaatttgct-tatgctaattcattgcct
|||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||| || ||| |||||||||||||||||||  | | | |       | | | |||   | |||| | | || ||||    |   || | | |    | ||  |   |  ||  |   |||||  |  |       
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaatatacaaatagataattta-gctctgtatcatcacagtgatgtctagctggaattaactggcatacaaaatggatgcgtgatatgcacaaacg------

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G09840.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctcttttctgcttacttacattttg------taacttactgtgaatgtttgtagtaattcaggatttaggttaaatttgc-ttatgctaattcattgcct
||||| || || ||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||      |||  | |  ||  |||     |       |||  |    | | || || |  |  |  | |  ||   | |||   |  || || || ||        
GTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGgtatgccttctaatgttattgattatcacctaccagaataatctttaatcagtggttttgttggtgaatgcattttttcaaagaggagttctggtatttg-------

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctcttttctgcttacttacattttgtaacttactgtgaatgtttgtagtaattcagg--atttaggttaaatttgcttatgctaattcattgcct
|||||||| || ||||| ||||||||||| || |||||||| ||||| || || |||||||| ||||| ||||||||||||||||| |||||||||||  |       |  |    | |  ||  |  ||   | || | |||   | || | |   ||    | | |||| | |  | ||     || |   ||   
GTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGgtataccgctagtagtatcaattatcacctaatagggttctcttaatcgatata-tgaccaagcttgtctcggtttagtgaggttgattgaagtatatgtg-

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 9
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgt----tcattctcttttctgcttacttacattttgtaactta-ctgtgaatgtttgtagtaattcaggatttaggttaaatttgcttatgctaattcattgcct
|| |||||||| || ||||||||||||||||| || ||||| ||||| || || |||||||| || ||||| ||||| |||||||| |||||||||||    || ||| |||| ||    |   | |  ||  ||  || |||| |||||||||  |   |       |    |   | | | | | |   | ||    | 
GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAGgtatgctctttccctttcctttgaaaccataagttcaaatgtatctgtcaatgtttgtgctctctttctccct---ctccctctccctctccc--tccacccacc

upper sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctcttttctgcttacttacattttgtaacttactgtgaatgt-ttgtagtaattcaggatttag-gttaaatttgcttatgctaattcattgcct
|| ||||| || || ||  | |||||||||||||||||||| || || || || || || |||||||| || || ||  ||||||| ||||||||||| |      | |     ||| |    |  | |       ||   ||||  ||||  | || |      || ||||  | |  | ||  |||  |  ||  |
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtgttagtggtctggtatggtgctttggagatgtactgtaacagttgattggaaagcgttacctgtattcataataa--cggtgatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719212|gb|AW306859.1|AW306859
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAG                         GTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAG                         GTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|13312538|gb|BG406189.1|BG406189
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAG                         GTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|208078311|gb|GD877523.1|GD877523
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAG                         GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|13479623|gb|BG508966.1|BG508966
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAG                         GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|7589778|gb|AW705545.1|AW705545
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAG                         GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
EST: gi|193434108|gb|FK402332.1|FK402332
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAG                         GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGA
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCGTGGCACAAGgttcattctc ... aatttgatagGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGA