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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgtttctataatatcagattaattgatgtttcaagttgcaaagtattttgacttcataaagttttgatgagattttttccccagttaaagagttaacatttgatgatgttttgggcag

Basic information

species Glycine max
transcript GLYMA12G27300.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G27300.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G027756_T02 (Zea mays), 5'ss of exon 6
GGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgtttctataatatcagattaattgatgtttcaagttgcaaagtattttgacttcataaagttttgatgagattttttccccagt-taaagagttaacatttgatgatgttttgggcag
 || || ||||| ||||| ||||| ||||| || || || || || ||| ||||||| |||||||| |||||||||||||| || || ||||| || || ||  | || ||    | | ||||  ||| |  ||    ||||  ||    |  ||  ||    ||      ||| | | ||||     | | |  ||                            
AGGTATCACTGCCATTGAAATGGCTAAAGGTGAACCCCCTCTGGCAGATATTCATCCCATGAGAGTTCTTTTCATCATACCTCGTGAAAATCCTCCGCAGgtaatttgatta---attttcag--taact--tgccaaaagtaccagtacacattt-ctatgcaagaa---gataaaagttttgtattaatatgcag----------------------------

upper sequence: GLYMA12G27300.2 (Glycine max), 5'ss of exon 10
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 10
GGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgtttc---tataatatcagattaattgatgtttca-----agttgcaaagtatttt--------gacttcata-------aagttttgat----gagattttttccccagttaaagagttaacatttgatgatgttttgggcag
 || || ||   ||| |||||||||||||| || ||||| |||||||| |||||||| |||||||||||||| ||||| ||||| || |  || || || |||   | ||     |||  | |  |    |   | | ||       ||||| || | ||| |         || | |||       | || |||||     ||     || |  || || | | |||||  ||| | || |  |   |||
TGGAATAACAATGATAGAGATGGCAAAAGGAGAACCTCCCCTTGCTGACCTTCATCCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGCCCTCCTCAGgtttcatattctaaatattgttttggcacgagaaaggcttgttagatagttggaatgcattgtttgagacgaacctaatactgccatatgtcttgattgcgaagccacctttcagagctagatatttaac--ttgtttatatcctccacag

upper sequence: GLYMA12G27300.2 (Glycine max), 5'ss of exon 10
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 10
GGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgtttctataatatcagattaattgatgtttcaagttgcaaagtattttgacttcataaagttttgatgagattttttccccagttaaagagttaacatttgatgatgttttgggcag
 || || || |  ||||||||||||||||| || ||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| | ||||||||| |||     | | |  | | | |   | ||  | |||  |     ||  ||  |||| ||    | | ||||    |  |||| |   |||                                  
CGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAACTCCACCACAGgtttcacatattttcattttaaacatgataaaagttatactggtcactgtgctttgcctcagcagaatttt----accttttctgggcag----------------------------------

upper sequence: GLYMA12G27300.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 10
GGGCATTACTGCGATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgtt---ctgtgtttctataatatcagattaattgatgtt----tcaagt--tgcaaagtattttgacttcataaagttttgatgagattttttccccagtt--aaagagttaacatttgatgatgttttgggcag
||| || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||| || || |||   |  |  |||  | || ||| | | | | || ||    |||| |  |    | || |  || |   | |     ||   |  | || |||  ||||  ||||  |  | | ||  || | | ||| ||||
GGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGgtttgccaatcattccttgatgtcatacttactaattttcttgtcaattgatcttgaataatgagagtcatttaccagatggaaaattattctccatagttctaaaggatagatactttgtgtt-tgttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207838828|gb|GD810476.1|GD810476
EST:     CATCCAATGAGAGTGCTTTTCTATTCATACCCCGAGAGAATCCACCACAA                         CTAGATGAACACTTTTCTCGCTATATGAAAGA
genomic: CATCCAATGAGAGTGCTTTTC-AT-CATACCCCGAGAGAATCCACCACAAgttctgtgtt ... ttttgggcagCTAGATGAACACTTTTCTCGCTATATGAAAGA