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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatcttagtcgtattttttttattaaatgtgacgtgtcaaggctgttgctttgtccactgttcattatgtatatctgtatgactacttactttac...

Basic information

species Glycine max
transcript GLYMA12G15470.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 11
GGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatcttagtcgtatt----ttttttattaaatgtgacgtgtcaaggctgttgc---tttgtccactgttcattatgtatatctgtatgactactta--ctttac--
 || ||||||||||||||||||||||||||||| || || || ||||| ||  | || || || |||||| | || ||||| |||||||||||||| || |||  |   | ||  | |      | |  ||   ||  | |  | |         ||      |||  ||| | | |  ||   ||  ||    |   ||   || |||  
TGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAAgtaagtgaatcagatgaaacataatctgctacacaacttcagatcttggtatccatgagaaaatgtgtactctccttggtgctcattggtgctgccttttggtctctacag

upper sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 11
GGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatcttagtcgtattttttttattaaatgtgacgtgtcaaggctgttgctttgtccactgttcatt-atgtatatctgtatgactacttactttac--
 || |||||||||||| | |||||||||||||| || || || ||||| || || || ||||| |||||| | || || || ||||||||||| || || |||  ||    ||    |   |||| |  ||  ||  | | | | || |     | | |  ||   ||||  |||  ||||  |     |   |  | | |  
TGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAAgtaagtaaacgag----aacattttca--aacagtcgctttttatgg-tacatttatatttacctgtcatggatgcttatcaatgctcatttctggtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31475663|gb|CD417691.1|CD417691
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCTATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|193539389|gb|FK497743.1|FK497743
EST:     CCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAACTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: CCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|208211396|gb|GE009531.1|GE009531
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|193518950|gb|FK475793.1|FK475793
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|207694587|gb|GD678322.1|GD678322
EST:     GGCTACCTAATGGCCGTCCACTG-CCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|193651509|gb|FK594652.1|FK594652
EST:     GGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|193415649|gb|FK380609.1|FK380609
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|209723556|gb|BW672206.1|BW672206
EST:     ACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: ACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|31306112|gb|CD391315.1|CD391315
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|193455304|gb|FK417811.1|FK417811
EST:     TAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: TAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
EST: gi|208305637|gb|GE109078.1|GE109078
EST:     CCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAAAATAAGGCTCATCCCAGAGCAT
genomic: CCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATC--AAT-AGGCTCATCCCAGAGCAT
EST: gi|192301990|gb|FG995160.1|FG995160
EST:     GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAG                         TTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT
genomic: GGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct ... ttaactacagTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATT