1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttcttctccaaactctacaatatattcttagtttgtaaacaaaaattttaccttagatgaggatggtaaaataaaggtgtggcaattctaggaaatatagggtagataaacttaggttggatggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtag
species | Glycine max |
transcript | GLYMA12G10270.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAGCAAGCCATGTCATCCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|120531623|gb|EH259756.1|EH259756
genomic: AGCTCAGCAAGCCATGTCAT-CCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|298168048|gb|HO013311.1|HO013311
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttcttctccaaactctacaatatattcttagtttgtaaacaaaaattttaccttagatgaggatggtaaaataaaggtgtggcaattctaggaaatatagggtagataaacttaggttggatggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT