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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtacagtttatgataacaacttttgttttttgtagttaatcatatcccatttaccaaaccttctaacagaaaccatggttaacttgtttctctttttctttgtttaacag

Basic information

species Glycine max
transcript GLYMA12G07890.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g01140.1 (Oryza sativa), 5'ss of exon 9
GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtacagtttatgataacaacttttgttttttgtagttaatcat--atcccatttaccaaaccttctaacagaaaccatggttaacttgtttctctttttctttgtttaacag
|||||||||| |||||| | ||||| ||||| || ||||||||||| |||||||  |   ||| |   |         ||| |  | | | ||  | |  ||||  | |   ||||     |    ||  || || ||  ||   ||| | | ||  | |||
GTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAGgtactata-gtgacagacatgggaaaagtttctgctgagttattcaacatatttgtctacaattcttttgtatgtaat--ttgacatgagtccaatttgcct-gtggatcag

upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G001457_T02 (Zea mays), 5'ss of exon 8
GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtacagtttatgataacaacttttgttttttgtagttaatcatatcccatttaccaaaccttctaacagaaaccatggttaacttgtttctctttttctttgtttaacag
|||| || ||||||||| | ||||| ||||||||||||||||||||||||||||    | | |||| |  | |    |||| ||  || |   ||    |||    |||  | | | |  |   | | |  |    |||   |  ||  ||         
GTAAGAAATTCTGGAACCTCTTTCACTTGCAGCCTATGCGTGATCAGAAGgtac----tgtaataagagatatgagattttttacgtagt---atttggtttg--gaactatttcatatgatttaagatgcatccattttgatggttgattag-------

upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 10
lower sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 9
GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtaca---gtttatgataacaacttttgttttttgtag---ttaatcatatccc--atttaccaaaccttctaa--cagaaaccatggttaact-tgtttctctttttctttgtt--taacag
| || |||||||||||| | || || ||||| ||||||||||||||||||||| |   |||||     | | |||   || |  |      | || |  ||||   ||||        || | |     ||||    | |  || | ||  |  |||  | ||||  | ||||
GAAAGAAGTTCTGGAACATTTTCCACTTGCAACCTATGCGTGATCAGAAGgtataatggtttacatagatatcttgcattatacggcaccttcaaactaatcctcaatttcttttggtttatgaatttaaaactgaagatgtctatattctttctttgatatgttgttgacag

upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 9
GTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGgtacagtttatgataacaacttttgttttttgtagttaatcatatcccatttaccaaaccttctaacagaaaccatggttaacttgtttctctttttctttgtttaacag
| || |||||||||||| |||| ||| |||||||||||||||||||||||||| | ||    | |  |  ||       || ||  ||||  | |  | | ||  |   |||||    |   |  |    |                             
GGAAGAAGTTCTGGAACCTGTTCCATCTGCAGCCTATGCGTGATCAGAAGgtagaattcccaagacaatattcccacacttttatataatattgtttcttgtaatatgacttct--ttgtttctgtaaacag----------------------------