Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGgtatgttttaagtcatgctctccttactaatttggagttagatttcatgttggaagtctagtttatttttcatggtatgttatgggactagaagcacataattttaaagtaaaataccaaatatctgtttgtgatgaaatctattttccttgatttgaccattatgattatatag
Basic information
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G60410.4 (Arabidopsis thaliana), 5'ss of exon 10
GCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGgtatgttttaagtcatgctctccttactaatttggagttagatttcatgttggaagtctagtttatt-tttcatggtatgttatgggactagaagcacataattttaaagtaaaataccaaatatctgtttgtgatgaaatctattttccttgatttgaccattatgattatatag
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GCTTGGTGTATGCTCTTGAATGATAAAGTTCTCTTTAGGATGCAGTGGCCTCAGTATGCTGATCTGCAGGTCAATGgtatgacaatgacatcgaccagagttttagtc--ggttgagcatttcctttgaaacaggggaatgttgttttatttcatgttgcataaattcctgtgggcac--------------------------------------------------------------------------
upper sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 5'ss of exon 9
GCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGgtatgttttaagtcatgctctccttactaatttggagttagatttcatgttggaagtctagtttatttttcatggtatgttatgggactagaagcacataattttaaagtaaaataccaaatatctgtttgtgatgaaatctattttccttgatttgaccattatgattatatag
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GCTTGGTGTATTCTCCTTAATGACAAGGTTTCATTTAGGATGCAGTGGCCACAATATGCAGACCTACAAGTCAATGgtatgcc--aactgat-ctttgattccactcattaagtgatacatcactacagataaatagctgaaattgctttttattttttattttttcttat-tatagttc-----------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23729846|gb|BU763027.1|BU763027EST: ATACAGACCTGCAGGTCAATG GTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTA
genomic: ATACAGACCTGCAGGTCAATGgtatgtttta ... gattatatagGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGgtatgttttaagtcatgctctccttactaatttggagttagatttcatgttggaagtctagtttatttttcatggtatgttatgggactagaagcacataattttaaagtaaaataccaaatatctgtttgtgatgaaatctattttccttgatttgaccattatgattatatag
- - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG