Sequence
atgc intronic sequence ATGC exonic sequenceCTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGgtttgcattaaatttctgtctgaagtctccctttcatttttttttttcaatttttttttccaaataacaagtatgttcttgttctgaaaatctactagac...
Basic information
species | Glycine max |
transcript | GLYMA12G07470.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07470.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G79150.1 (Arabidopsis thaliana), 5'ss of exon 10
CTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGgtttgcattaaatttctgtctgaagtctccctttcatttttttttttcaatttttttttccaaataacaagt-atgttcttgttctgaaaatctactagac
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CCTTCAAAGTCATGAGGAGCAACTTAAATGCCTTGAATGTTGACTTGCAAGACTTCTTTGTCCAACTTTACAACCTCATTCTCGAGTACCGCCCTGGAAGgtttgttataactttttcctc----ttttttaaccacgacataagttaaatctagtttagtctaaaacactttgtgatgtgatacag--------------
upper sequence: GLYMA12G07470.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0085g00020.t01 (Vitis vinifera), 5'ss of exon 10
CTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGgtttgcattaaat-ttctgtctgaagtctccctttcatttttttttttcaatttttttttccaaataacaagtatgttcttgttctgaaaatctactagac
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CCTTCAAAGTGATGAGGAACAATCTTGAGGCCTTGAATGTTGATTTACAGGAATTCTTCATCCAGCTTTACAATCTTAGTATTGAGTACAGGCCCGGAAGgttagtgtctgacattcgatctccaaaaccgttactaagtgaacacgaatgctatattattcactgtgcagaaatgttccgttcatgcttagct-ctgaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15201046|gb|BI424664.1|BI424664EST: GACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAG AGATCAAGGAGAGGTGTTGGCAGAAGCTTTGAAGATAATGTTGTGTGATGA
genomic: GACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGgtttgcatta ... tatgaaccagAGATCAAGGAGAGGTGTTGGCAGAAGCTTTGAAGATAATGTTGTGTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGgtttgcattaaatttctgtctgaagtctccctttcatttttttttttcaatttttttttccaaataacaagtatgttcttgttctgaaaatctactagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt