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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGgtggttgttttcttttcaagcttgtaagatactattgctttgaagtacaggttctcactgctgttttgtgtctggatag

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 9
GATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGgtg--gttgttttcttttcaagcttgtaagatactatt----gctttgaagtacaggttctcactgctgttttgtgtctggatag----------------
|||||| | |||  |||| || | || || || ||||||||||||||||||||||||||   |  ||||     ||  | | ||| |   |||     || ||||    || |  |    ||| |  ||||     || ||||| || |                   
GATGATGATGATCTGCTTTGGAGGTCTCCAGGTACTCCTGTTTTCACTGCACCAGAATGCTGTCAAGgtacaactgcctaccttttatatttgagtactagtatttactgcgtgcagaatcagttagtcaccaa-attatgtgtatgaagttcaacaattgctagata

upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 10
GATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGgtggttgttttcttttcaagcttgtaagatactattgctt---tgaagt---acaggttctcactgctgttttgtgtctggatag--------------------
|||||||| |||||||| || || || ||||||||||||||||| ||||||||||| ||   ||||||| |  | |  ||| |    || |  |    || | || |   | || |    ||||   |||    | |||   |      | |                    
GATGATAATGATGAGCTCCGCCGTTCTCCTGGCACTCCTGTTTTTACTGCACCAGAGTGCTGTTTAGgttggggatcccttct---actggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacag

upper sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 10
lower sequence: EFJ15000 (Selaginella moellendorffii), 5'ss of exon 7
GATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGgtggttgttttcttttcaagcttgtaagatactattgctttgaagtacaggttctcactgctgttttgtgtctggatag
|  ||| | |||    | || ||||| |||||||||||||| ||||| |||||||||||   |  ||||  || |  |  ||   ||||  |  || |  | |  | ||   |    ||| |   | || |||| |    ||| ||
GGCGATGATGATCTTTTACGTCGATCTCCTGGCACTCCTGTCTTCACAGCACCAGAATGCTGTAAAGGTATTTCTCgtgattg-gagctcttccgacatgactcatgtg---tgtttgtttt--gttct-ttttattctcggaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991895|gb|BI317568.1|BI317568
EST:     TGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG                       
genomic: TGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTA---Ggtggttgttt ... gtctggat