1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAACCAACATACAACAAGCTTGCTAAACATCTTCGCAACATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaaatttaaactagatgttgacagaatatactatagtttgtgctattgctattatcaataatttgcatttgctctaacacttggtatgttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcag
species | Glycine max |
transcript | GLYMA12G07260.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTEST: gi|31457199|gb|CD399227.1|CD399227
genomic: TTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: ATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTEST: gi|15814196|gb|BI786471.1|BI786471
genomic: ATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTEST: gi|15814100|gb|BI786375.1|BI786375
genomic: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
genomic: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACCAACATACAACAAGCTTGCTAAACATCTTCGCAACATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaaatttaaactagatgttgacagaatatactatagtttgtgctattgctattatcaataatttgcatttgctctaacacttggtatgttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA