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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatttctcatttgcatctttgtttcattgagttactattagtatttggtaagctgattatgtttgattgtgatag

Basic information

species Glycine max
transcript GLYMA12G06990.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatt-------tctcatttgcatctttgtttcattgagttactattagtatttggtaagctgatt--atgtttgattgtgatag--------
||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||  ||||||          |   | ||  ||     |   |||||     |||| ||  ||  |||| | |||  | |    ||| |  |          
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315615|gb|FK007443.1|FK007443
EST:     TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG                         GTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC
genomic: TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatttct ... attgtgatagGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC
EST: gi|254347936|gb|GR854185.1|GR854185
EST:     CGCAGTTTCTGCTATGTCTCTGATCTG                         GTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC
genomic: CGCAGTTTCTGCTATGTCTCTGATCTGgtatatttct ... attgtgatagGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC
EST: gi|192315616|gb|FK007444.1|FK007444
EST:     TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG                         GTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC
genomic: TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatttct ... attgtgatagGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAAC