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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctagcttttcttggcattttcacataatctatttgaatttgattcatcttgtagctgtgctgattgtgaatagtctttattggtcaatttgttaa...

Basic information

species Glycine max
transcript GLYMA12G05350.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctagcttttcttggcatttt-cacataatctatttgaatttgattcatcttgtag-ctgtgctgattgtgaatagtctttattggtcaatttgttaa
 |||||| |||||||||  || || |||||||| ||| | |||||||||||||| || ||||||||||| || ||||||| ||| ||||| ||  | ||||| ||| | |  |   | | || |  |      |    |||||  || ||  |  | ||  |   |   ||     | |   | | |  || ||      | 
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag

upper sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 9
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctagcttttcttggcattttcacataatctatttgaatttgattcatcttgtagctgtgctgattgtgaatagtctttattggtcaatttgttaa------
||| ||| ||||  | || |||||||||||||||||| | || || |||||||| || ||||| ||||| || |||||||||||||| || ||| |||||||||| ||    | |||     | |  | ||  || ||||  |  ||   |   || ||    |    |  |  |||| ||||||   |     |   ||      
ACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGgtgagata----tgcttaatgctcttccttatgctgtttgg-taggagaaaaactgaagacaagtgtgtgttccatag-ctttatcaatatgagtaaaaacttgct