1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattttggttttgtcctttgccatttactttgtgcgcttctggatttttatctttaattgttaatttttctctctatcccttag
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGATTGTTGAATTCACTTATTTGTCCACACAG ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAAEST: gi|208097811|gb|GD892608.1|GD892608
genomic: TTGAAGATTG-TGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAA
EST: ACCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAG ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAAEST: gi|193314799|gb|FK280963.1|FK280963
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
EST: ATCTTTGTGAGTTTATTGAAGGTTGTGAATTCACTTATTTGTCCACACAG ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAAEST: gi|208300498|gb|GE100263.1|GE100263
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
EST: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAG ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTT
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattttggttttgtcctttgccatttactttgtgcgcttctggatttttatctttaattgttaatttttctctctatcccttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA