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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCGATTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatgaaatgttgatgtcttgtctgatttcatgtgtatcttaaggttgatttttagtctctatatatttagcctttgatatattgcag

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
TTTCCGATTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagtta----tgaa----atgttg--atgtcttgtctg-----atttcatgtgtatc----ttaaggttgatttttagtctctatatatttagcctttgatatattgcag
||  |  ||  | || |  || ||||||||||| ||||||||||||||  | |||||| | ||  ||||  |||| |||||||||||||| |||||||||||||   |    |||     || |||  |  | ||  |||      ||| |  | | ||    | | ||  | ||  |    || | || |  |   | ||||   ||||||
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301647|gb|FG997603.1|FG997603
EST:     TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAA                         GAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT
genomic: TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatg ... tatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT
EST: gi|192327460|gb|FK017817.1|FK017817
EST:     TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAA                         GAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT
genomic: TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatg ... tatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT
EST: gi|207825862|gb|GD801045.1|GD801045
EST:     TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAA                         GAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT
genomic: TATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatg ... tatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACT