Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatgttggttatgcatagaaagtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatgatacag

Basic information

species Glycine max
transcript GLYMA12G03060.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatg--ttggttatgcatagaaagtcctta----taattctatgttt-cataaatttagactgaca-atattcatga---tctaaataatg--atacag
| ||  ||||||||||||| || |||||||| || ||||| |||||||||||||| |  | | || | || |     | |  |     ||    |||    || | |   |     ||| ||  |||  |   |||   | ||    | |||
GAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGgtaaggatggcttcttcacaagttattcaaaggaacaaactaatgcacacacataacgatgtcaacacattctcacaagtatctctttcattctgtgcag

upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 9
GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatgt----tggttatgcatagaaagtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatga--tacag
||||||||||||| ||||| |||||||||||||| || ||||||||||| ||||||      | | | |   |      || | ||  ||  | |  |   |  | | |   ||  | ||  |   | |||||  | |  | |||
GTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGGgtatagcctgttgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacat--agtgtttaaattgtcacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6915325|gb|AW396855.1|AW396855
EST:     GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatgttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACG
EST: gi|192301956|gb|FG995574.1|FG995574
EST:     GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGTTACACG
genomic: GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatgttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACG
EST: gi|16347093|gb|BI972688.1|BI972688
EST:     GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGCGGTGGTATGAGTTCTGCACAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatgttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACG