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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgtagtctctcttcttcaggctctgcaaaagtgcatgtagccggtctgtagtttttgcagtttttcatgggtgtatacaattcaaagataatct...

Basic information

species Glycine max
transcript GLYMA11G37760.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258424|gb|BG881332.1|BG881332
EST:     AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCAAATTAG                         ATGTGGGACTTGAACCCTAATGGGACCCTGGTGAATA
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATA
EST: gi|17519483|gb|BM188525.1|BM188525
EST:     AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAG                         ATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTG
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTG
EST: gi|8827962|gb|BE211692.1|BE211692
EST:     AAGAGTTCAAGAGAGGGACATTNTCTCCCTGCAGTTGGGATTCGAATCAG                         ATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGT
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgtagtctctcttcttcaggctctgcaaaagtgcatgtagccggtctgtagtttttgcagtttttcatgggtgtatacaattcaaagataatct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG