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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAATCAGAGGGCAAACTGAAGGGTATTTTGGGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgtgttttgaagtaacattggaagataaactatcatgatcacttttttggtgttctcttagtctataatgacttaccatgttgaatgttactttcatctgcag

Basic information

species Glycine max
transcript GLYMA11G37360.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37360.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G13440.2 (Arabidopsis thaliana), 5'ss of exon 10
GGAGGAATCAGAGGGCAAACTGAAGGGTATTTTGGGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgtgttttgaagtaacattggaagataaactatcatgatcacttttttggtgttctcttagtctataatgacttaccatgttgaatgttactttcatctgcag
||||||||| || |||||| ||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||          |   || ||   |  | |||       | ||   || |||| || | || |    | | | |   | | |   ||    ||     ||   | |  ||
GGAGGAATCTGAAGGCAAAATGAAGGGAATTTTGGGATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGgta---------taaaaaatattgtctgtaga------gtgatatacagttttctgatcttataaatggcgagagcaaataat--tgaaatattgggtttgtgtttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720387|gb|FK660683.1|FK660683
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GACTAGCATATTTGACGCCAAGGCCGGAATTT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTT
EST: gi|207713337|gb|GD696734.1|GD696734
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATG
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATG
EST: gi|16278597|gb|BI942986.1|BI942986
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATAATTGACGCCAAGGCCGGGATTTCTGTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16279616|gb|BI943528.1|BI943528
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16277735|gb|BI942536.1|BI942536
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|192332781|gb|FK026782.1|FK026782
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254339009|gb|GR847726.1|GR847726
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16281228|gb|BI944379.1|BI944379
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|21993774|gb|BQ785302.1|BQ785302
EST:     CCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: CCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|37995913|gb|CF807502.1|CF807502
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|209707255|gb|BW670855.1|BW670855
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|37996629|gb|CF808218.1|CF808218
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|37996780|gb|CF808369.1|CF808369
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|37996554|gb|CF808143.1|CF808143
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|120495128|gb|EH223295.1|EH223295
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16277174|gb|BI942242.1|BI942242
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|38191112|gb|CF920318.1|CF920318
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254338300|gb|GR849825.1|GR849825
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254345592|gb|GR851754.1|GR851754
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16284101|gb|BI945906.1|BI945906
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|214004696|gb|DB984876.1|DB984876
EST:     CGAAGATGATGTTGTGTCTACTGATTTTGTT-GTAAATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTG
genomic: CGAAGATGATGTTGTGTCTACTGATTTTGTTGGT-GATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTG
EST: gi|38192803|gb|CF922009.1|CF922009
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254346357|gb|GR856079.1|GR856079
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254336268|gb|GR842447.1|GR842447
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|208270388|gb|GE071256.1|GE071256
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|193468090|gb|FK430893.1|FK430893
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16343428|gb|BI969023.1|BI969023
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|151403912|gb|EV273722.1|EV273722
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254338301|gb|GR849826.1|GR849826
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|15664158|gb|BI701529.1|BI701529
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|15589587|gb|BI674203.1|BI674203
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|120495834|gb|EH224001.1|EH224001
EST:     ATACACCGAAGATGATGTCGTGTCTACTGATTTTGGTTGGTGATAACCAG                         GTCTAGCATATTTGAC
genomic: ATACACCGAAGATGATGTTGTGTCTACTGATTTTG-TTGGTGATAAC-AGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGAC
EST: gi|254342461|gb|GR858623.1|GR858623
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|23735137|gb|BU765835.1|BU765835
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254346356|gb|GR856078.1|GR856078
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|15815204|gb|BI787479.1|BI787479
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|120495945|gb|EH224112.1|EH224112
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16284099|gb|BI945905.1|BI945905
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|192332782|gb|FK026783.1|FK026783
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254316432|gb|GR827969.1|GR827969
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254345591|gb|GR851753.1|GR851753
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|38193454|gb|CF922660.1|CF922660
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|209710027|gb|BW658855.1|BW658855
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|37994267|gb|CF806013.1|CF806013
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|209725888|gb|BW669698.1|BW669698
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|19937442|gb|BQ081292.1|BQ081292
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|254338891|gb|GR847608.1|GR847608
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|193719384|gb|FK650050.1|FK650050
EST:     GTATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: G-ATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|16282153|gb|BI944865.1|BI944865
EST:     GATACACCGAAGATGATGTTGTGTCTACTGATTTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GATACACCGAAGATGATGTTGTGTCTACTGA-TTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
EST: gi|21889260|gb|BQ742473.1|BQ742473
EST:     GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAG                         GTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT
genomic: GGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgt ... tcatctgcagGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAATCAGAGGGCAAACTGAAGGGTATTTTGGGATACACCGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAACAGgtgatgttgtgttttgaagtaacattggaagataaactatcatgatcacttttttggtgttctcttagtctataatgacttaccatgttgaatgttactttcatctgcag

- - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG