1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgttactcatttattatttaaaacccctttccagtgttcgtatacttaggcattttattgttaataacatattacgtcaaatcttttttttgtca...
species | Glycine max |
transcript | GLYMA11G19220.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGEST: gi|16996964|gb|BM086336.1|BM086336
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTG
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGTEST: gi|15285688|gb|BI469579.1|BI469579
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGT
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAT TCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGTEST: gi|193397078|gb|FK362020.1|FK362020
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGT
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATTGATTGCCTTGTGCEST: gi|6481479|gb|AW200750.1|AW200750
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCAT-GAT-GCCTTGTGC
EST: TGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGNCTGAAAGGTCATTGCATGATGCCTTGTGCGEST: gi|15815109|gb|BI787384.1|BI787384
genomic: TGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGG-CTGAAAGGTCATTGCATGATGCCTTGTGCG
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGTEST: gi|18041139|gb|BM309433.1|BM309433
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGT
EST: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAG CCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGT
genomic: TCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgtta ... tttgtttcagCCACCATGTTCTTGATGAGGCTGAAAGGTCATTGCATGATGCCTTGTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGGGCTAGgtacttgttactcatttattatttaaaacccctttccagtgttcgtatacttaggcattttattgttaataacatattacgtcaaatcttttttttgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc