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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactctctctctcaacgtgcttgttgtatacatttgcatatacaaggccaaacattctagttttatattctgtgtggatataacag

Basic information

species Glycine max
transcript GLYMA11G16220.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323235|gb|GR840040.1|GR840040
EST:     TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTT-CCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|208078502|gb|GD878806.1|GD878806
EST:     GAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: GAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|16343782|gb|BI969377.1|BI969377
EST:     TGGAATGGGAAGGTNNNNNNGCCATAGGTGAGAAN                         NNAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|207732738|gb|GD704817.1|GD704817
EST:     GGCCGGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: GGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|12688294|gb|BG154630.1|BG154630
EST:     TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|58019646|gb|CX706388.1|CX706388
EST:     TGGAATGGGAAGGTGGCCATGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|193378252|gb|FK345013.1|FK345013
EST:     GGCCGGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: GGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|26269516|gb|CA820579.1|CA820579
EST:     TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|7591313|gb|AW707049.1|AW707049
EST:     TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|207844575|gb|GD813962.1|GD813962
EST:     GGAATGGGAAGGTGGCCTAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGTTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: GGAATGGGAAGGTGGCC-AGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|20448999|gb|BQ253123.1|BQ253123
EST:     TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
EST: gi|58022640|gb|CX709381.1|CX709381
EST:     TGGAATGGGAAGGTGGCCATGCCATAGGTGAGAAG                         GCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC
genomic: TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAGgtgtgtactc ... gatataacagGCAGCATCAGAGTGGCTCTATGTTGTTCCCTGGGGTCTACGGAAGATTCTC