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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACCTTTGGGTCTCCATGGACTGATGAATCAGCTAAGGGAGATCCAGAGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACATgtgagatttttacattatgttttataatttcatttccctattttcaaaccttttctttgggctaactttttattattgcatgatgcag

Basic information

species Glycine max
transcript GLYMA11G15480.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15480.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
CAAGACCTTTGGGTCTCCATGGACTGATGAATCAGCTAAGGGAGATCCAGAGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACATgtgagatttttacattatgttttataatttcatttccctattttcaaaccttttctttgggctaactttttattattgcatgatgcag
|||||| ||||| || || ||| |||| ||  |||| || |||||||||||||| |  ||||| || ||||||| ||| ||||| |||||||||||||||||  | |  |   ||  |||| | ||| ||  | ||  |  | |    | |||   ||  | | | |     || | |  || |||||
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgtttaaatt--tctctatgctcttgggcatttctcttttg-tgattgccacttttggtttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338157|gb|CO982023.1|CO982023
EST:     AGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACAT                         CAAGGTTATTTTTCCAAGTTTTCGGTGGAAACATTGTTTTACATATTTTAT
genomic: AGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACATgtgagatttt ... catgatgcagCAAGGTTATTTTTCCAAGTTTTCGGTGGAAACATTGTTTTACATATTTTAT