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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatatctcatttgcatctttgtttcattgagttactgttagtatttggtaagctgattatgttttattgtgatag

Basic information

species Glycine max
transcript GLYMA11G15020.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatata-------tctcatttgcatctttgtttcattgagttactgttagtatttggtaagctgatt--atgttttattgtgatag--------
||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||  ||||||  |       |   | ||  ||     |   |||||     | || ||  ||  |||| | |||  | |    ||| |  |          
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200713|gb|BI424491.1|BI424491
EST:     TATGTCTCTGATCTG                         GTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGGCCAATCAAC
genomic: TATGTCTCTGATCTGgtatatatct ... attgtgatagGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGGCCAATCAAC
EST: gi|7233417|gb|AW568763.1|AW568763
EST:     TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG                         GTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGGCCAATCAAC
genomic: TCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatatct ... attgtgatagGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGGCCAATCAAC