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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAACCCTTGACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatgatacatgtttcttatttgtgatttattatcttgattcaagtactaggcgtgattgactaagattatacatttgaaatctattag

Basic information

species Glycine max
transcript GLYMA11G15010.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
TGGTGAACCCTTGACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatgatacatgtttcttatttgtgatttattatcttgattcaagtactaggcgtgattgactaagattatacatttgaaatctattag-------
||||||||| ||||| || || | ||| ||||| || ||||||||||||||||||||||||||||||||||  |  |   ||  || | ||||       ||    ||||  || ||| | |   | ||| |  |  |||  |      |  |   | |        
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa---ataattataattttatgaccataggattgac-catgtattggttattattaag-attatttgaagcccaattttcttcatgttaaag

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 10
TGGTGAACCCTTGACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatgatacatgtttcttatttgtgattta-ttatc--ttga---ttcaagtactaggcgtgattgactaagattatacatttgaaatctattag-
 || ||  |  |||| || || | |||||| ||||||||||| ||||| ||||| |||||||| |||||| ||      |   ||| | | |  | ||  | ||||   | ||   | |   | |   || |   | ||        |       |||   ||||| 
AGGGGAGACGATGACGGTGCAGGCTCCAGGCACTCAAACTCGTAGTTTTTGCTACGTCTCTGATATGgtacatcctgatcccctttatgaatcatcatgcaattattggtggagagtccggatgcctagcatatctcacagtagcggtgttcgaaaaaggaattaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524339|gb|BU083150.1|BU083150
EST:     CCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: CCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatga ... aatctattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
EST: gi|209727387|gb|BW663697.1|BW663697
EST:     GTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: GTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatga ... aatctattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC