Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatgaaatgttgatgtcttatctgatttgatgtgcatcttaaggttgatttttagtatgtatatatttaacccttgatatattgcag

Basic information

species Glycine max
transcript GLYMA11G11490.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11490.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 10
TTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatga----aatgttgatgtcttatctgatttgatgtgcatcttaaggttgatttttagtatgtatatatttaacccttgatatattgcag--------------------
|||||| || ||||| ||||| ||||| || || |||||||||||||| ||||||||  | ||| ||      || |||||||| ||| ||||||||||||| |||| |      | |  |  ||| || | |  ||  | ||| |      | ||    |||   |  | | |          | |||  ||                        
TTTCCGCCTTTTAGGGCGTGTGATGGCCAAAGCACTTCAAGATGGACGGCTATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagttttttttttactactagtgt-ttgtttagttaaaagtgaaatagtggtttctactttttcacttctgtcggcctttgctaataagttcgtcctctttcattgactaagcag

upper sequence: GLYMA11G11490.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
TTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagtta----tgaa----atgttg--atgtcttatctg-----atttgatgtgcatc----ttaaggttgatttttagtatgtatatatttaacccttgatatattgcag
||  |   |  | || |  || |||||||| || |||||||||||||| || |||||| | ||  ||||  |||| |||||||||||||| |||||||||||||   |    |||     || |||  |  | ||| |||      ||| |  |   ||    | | ||  | ||  |    |  | || |  ||    ||||   ||||||
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282699|gb|BE020260.1|BE020260
EST:     TATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAA                         GAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACT
genomic: TATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatg ... tatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACT
EST: gi|208247665|gb|GE050359.1|GE050359
EST:     TATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAA                         GAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACT
genomic: TATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatg ... tatattgcagGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACT