1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccattaatcgaccgttttctgactgtattaaatttaaactcgttacttatcaattggtgaacaattaacctcttgaatatattttccctgcttcggtctaaagggtatattttgtgcag
species | Glycine max |
transcript | GLYMA11G08180.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAG GCTCTTGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTAGAGEST: gi|208226183|gb|GE022724.1|GE022724
genomic: CAATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccatt ... ttttgtgcagGCTCTCGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTGGAG
EST: TAATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAG GCTCTCGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTGGAG
genomic: -AATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccatt ... ttttgtgcagGCTCTCGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccattaatcgaccgttttctgactgtattaaatttaaactcgttacttatcaattggtgaacaattaacctcttgaatatattttccctgcttcggtctaaagggtatattttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG