Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGGCCCAAATGCAGCTATAATTCATTATTCTCCAAAGGCAGAAACATGTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctaatttttaacagtttacagcattgacttttataatgaattatgttgttttcatgttttgcattcatgaccttcacctctgtatattgacaactggtggtgtctctgaag

Basic information

species Glycine max
transcript GLYMA11G06900.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06900.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 10
AGTTGGCCCAAATGCAGCTATAATTCATTATTCTCCAAAGGCAGAAACATGTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtcta--atttttaacagtttacagcattgacttttat----------aatgaattatgttgttttcatgt------tttgcattcatgaccttcacctctgtatattgacaactggtggtgtctctgaag
 ||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||||  | ||||| || |  |||||||| |||||||||||||| ||||| || | |  || || ||  ||||     || | | || |           |||  | || ||   |||  |||      ||||  || ||||  ||  |   | | || |||  |    |||||||| |||||
GGTTGGTCCAAATGCAGCTATCATTCATTATTCTCCAGATGCAGAAACATGTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaactatcttgaattgtttgggatatagccattaaccaaagaaggcaatacaataagtccattttttgtattaactttgtgtttatgatatt-gctattctttactgatgat--atggtgtctttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208177071|gb|GD974364.1|GD974364
EST:     ACAAAATTTANCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: ACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctaa ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
EST: gi|208301822|gb|GE099388.1|GE099388
EST:     GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAG
genomic: GTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtctaa ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAG
EST: gi|207832058|gb|GD805108.1|GD805108
EST:     TTCTGGAGCCCAG                         TATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT
genomic: TTCTGGAGCCCAGgtctgtctaa ... gtctctgaagTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCT