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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaaatgactcatgttgcttcatactgactagtgactaccctattttgtgaattag

Basic information

species Glycine max
transcript GLYMA11G05940.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 10
GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaa----ttaaaatgactcatgttgcttcat--actgactagtgactaccctattt-tgtgaattag
|| || ||||||||||| ||||| || || |||||||| || |||||||||||  | ||||| |||||| ||||||||||||| ||  ||  |||||||||||||  |   ||  |   | |||     || | |  |  ||  ||  || |     | | |  |  |||    | ||   |  | |||
GGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGGGTGCACCTACTCTGTATGACCATCCAGGGTCAGCTTATGGAAgtaagtcttctgctacgaagatcacaggtttgacacaaagcaactttgttaactggttaaatgttttctatttgacttacattgactag

upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G36960.2 (Arabidopsis thaliana), 5'ss of exon 8
GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaaat----gactcatgttgcttcatactgactagtgactaccctattttgtgaattag
|| || ||||| || ||  ||||||| || || ||||| || ||||| ||||| |||||||| ||||||||||||||  |||| | | |  |||||||||||||| |  |  ||| | | |   |  || ||    ||  ||  |   ||    || | ||        |  | |||||   ||||
GGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaag-acgactcacta-tataataccaacatactagaaacaaatgaatttcagctcattaagagaattctcactttgtc--ttag

upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 10
GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaaatgactca-tgttgcttcatac--tgactagtgactaccctattttgtgaattag-------
|| ||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||| || ||||||||||||||||||   | | ||| | ||  |  | |    || ||||  |  | ||  | | |  |   |     ||| |||    |         
GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatctt-ctcaagtatgcacgtggagttttgcactgtttatcaacacaattatttctttgtttttaattctgttgcatgttggttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319869|gb|FK012945.1|FK012945
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA                         GGGGAGATGCTCGGAGAACTAGTNNNNNNNTTTTTGTCGGCCGTCTTCCCC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCC
EST: gi|192298605|gb|FG989251.1|FG989251
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA                         GGGGAGATGCTCGGAGAACTAGTNNNNNNNTTTTTGTCGGCCGTCTTCCCC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCC
EST: gi|208090237|gb|GD890060.1|GD890060
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA                         GGGGAGATGCTCGGAGAACTAG
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAG