1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATATTAAGTGTCACGATATTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttccagaatatttgagatatctcttgctgttctttccccccacttctgcaatgtttttttattaactttggcttatctttcag
species | Glycine max |
transcript | GLYMA11G05130.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAAT GGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCTEST: gi|208186971|gb|GD987171.1|GD987171
genomic: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttcca ... tatctttcagGGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCT
EST: GAGAAGAGCAGGATAANGCCAAAGAGAAGAATGCAGAGGATGAAGATAAT GGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCTEST: gi|208288386|gb|GE087451.1|GE087451
genomic: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttcca ... tatctttcagGGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCT
EST: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAAT GGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCTEST: gi|17152823|gb|BM142756.1|BM142756
genomic: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttcca ... tatctttcagGGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCT
EST: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAAT GGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCT
genomic: GAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttcca ... tatctttcagGGTAAGGTAGGCTCGTGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATTAAGTGTCACGATATTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATgtatgttccagaatatttgagatatctcttgctgttctttccccccacttctgcaatgtttttttattaactttggcttatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA