Sequence
atgc intronic sequence ATGC exonic sequenceATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatagacttcttttaattagctatgtattgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg...
Basic information
species | Glycine max |
transcript | GLYMA11G03650.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G17330.1 (Arabidopsis thaliana), 5'ss of exon 12
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatagacttcttttaattagctatgt-attgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg-------------------------------------------------------------------
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CTGCCTTGCCATATGAAGGAACCAGGAAGAGACGTAGAGCTGCTCTTGGGGATCATATTTGGAAAATTGGGGATAGGGTAGACTCGTGGGTGCATGACAGg-----tagtactgtctccat--aactagctgttttattggtctcc-cctaacagggatcagacaaaaccacaaaatctgtatatcaatttcagttttccgttttggaaatcctattcattccacgaagtttggaactttgatctatatttgttttgtttttcttcag
upper sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0176g00090.t01 (Vitis vinifera), 5'ss of exon 6
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatag-act---tcttttaatta-gctatgtattgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg-------------------------------------------
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-------------------------------ACGTAGAGCAGCCATTGGAGACTATGCTTGGTCTGTTGGGGATAGAGTTGATGTATGGGTACAAAATTGGTATGTCAATATGATACTAAATATTATGTTTgtgggatgggataacaatcataagccagaaatttcaaggaatgaaaatcatgataaattgtactaaataaataataaataaaacataataaaaacaaataaaagatgataaaaatag
upper sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0229g00110.t01 (Vitis vinifera), 5'ss of exon 13
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatagacttcttttaattagctatgtattgatggccatttcatcaataccctttgaagttattgtgtgcgtat-attataacttcttcaccg--
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CTGCTATACAATTTGAAGGAACAAGGAAGAGACGTAGAGCAGCCATTGGAGACTATGCTTGGTCTGTTGGGGATAGAGTTGATGTATGGGTACAAAATTGgtatgtcaatatga--tactaaatattatgtttgtgg-gatgggataacaatcacaagccagaaatttcaaggaatgaaaatcatgataaattgtactaaataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16995567|gb|BM084939.1|BM084939EST: GATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAG CTGGCAGGAAGGAGTCATAACAGAGAAGAATAAAAA
genomic: GATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttat ... ttgtcatcagCTGGCAGGAAGGAGTCATAACAGAGAAGAATAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatagacttcttttaattagctatgtattgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA