1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtattatgctctattctaattcatgacaatcactatcaccctatgtatttactaattttaatttttcttactttttactcaccatag
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAAAGAAGTTTTTCAAGGAAAGCGTCATGATTGTG GTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGEST: gi|254328593|gb|GR832965.1|GR832965
genomic: CAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtatta ... ctcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
EST: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTG GTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGEST: gi|254324665|gb|GR834090.1|GR834090
genomic: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtatta ... ctcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
EST: GGAAAGTGTCATGATTGTG GTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGEST: gi|254341537|gb|GR852674.1|GR852674
genomic: GGAAAGTGTCATGATTGTGgttagtatta ... ctcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
EST: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTG GTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGEST: gi|254328592|gb|GR832964.1|GR832964
genomic: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtatta ... ctcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
EST: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTG GTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
genomic: TTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtatta ... ctcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGTGTCATGATTGTGgttagtattatgctctattctaattcatgacaatcactatcaccctatgtatttactaattttaatttttcttactttttactcaccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA