Sequence
atgc intronic sequence ATGC exonic sequenceTGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaatatgcaagactttttacttgctcctacatttgcatatgtttgttataaaggcttgttttcatgtcctctactggattacctacag
Basic information
species | Glycine max |
transcript | GLYMA11G00370.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaa---tatgcaagactttttacttgctcctacatttgcatatgtttgt-tataaaggcttgttttcatgtcctctactggattacctacag
|||||||| |||||||| | |||||| |||| ||||| |||||||||||| ||| ||||| || ||| |||| || || || || || |||||||||||| | || | | | | |||| ||| | || | || || | | |||||| | || | | |
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatccttagtgtatcaattgagtatatataaatggttaatctgcag----------------------
upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttg--aatatgcaagactttttacttgctcctacatttgcatat----gtttgttata---aaggcttgttttcatgtcctctactggatt----acctacag----------------------------------------------------
||||||||||| ||||||||||| ||||| || |||||||||||||| ||| |||||| || || ||||| || ||||| ||||| || || ||||| |||||||| | || | ||| || | || || ||||| | || ||| | | | || || | | | | | | | || |
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14740.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagt---------tgaatatgcaagactttttacttgctcctacatttgcatatgtttgttataaaggcttgttttcatgtcctctactggattacctacag
|| |||||||| || |||||||||||||| || |||||||||||||| ||| |||||| || || ||||| || || || || || || || ||||| ||||||| |||||||| ||| || | | | | | | | | | | | || | || |||| | | | | ||
TGCCAGTGCCCAGAGTGTAGCTGCAAGAACACATGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCATCAgtgagtatttttttttgaatatggaagtctaaagtttgattattcaaatagtgtttctcccacctgttttccaattgttattggttctatttgtcgaaatctag
upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaatatgcaagactttttacttgctcctacatttgcatat---gtttgttataaaggcttgttttcatg-------------tcctctactggattacctacag
||||||||||||||||| |||||||| || || ||||| ||||| || |||| ||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||| || | || | | || || ||| | | | | | |||| | ||||| || ||| || | | | | | |||
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207778924|gb|GD753407.1|GD753407EST: ATACCTGCATAA GTAAAACTGGCAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGTTGATTT
genomic: ATACCTGCATAAgtgagttgaa ... ttacctacagGTAAAACTGGCAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGTTGATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaatatgcaagactttttacttgctcctacatttgcatatgtttgttataaaggcttgttttcatgtcctctactggattacctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC