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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatacaagttcatcagctatcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacag

Basic information

species Glycine max
transcript GLYMA10G42940.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatacaagttcatcagct---atcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacag---------------
|||||||| ||||| ||||| || ||||| ||||||||| | ||||| ||  |   |||||| ||||| |||||||| |||||||| ||||| |||||||||||   | | |    ||| ||    |    | ||  || |      |      ||  |  ||| |||    |  ||  ||| |                
ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgactgtttttgttgatttatttcagttttatatcaccaccacaactatcttgagtattctataaacatgttgcgtataagatttttcctgaagt

upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatata-caagttcatcagctatcttgcatgatggtttctta---acactgaatgattatattttgaacttctgtacag---------------
|||||||| ||||| |||||||| ||||| || |||||| | ||||| ||  | | ||| || ||||| |||||||| ||||| || ||||| |||||||||||  ||  ||  |   || |||     | ||  || |   | |       | ||  | || |  |  || || ||     || |               
ATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGGTCCATTACCCAAATTCCTATTCTGACAATGCCTAATGATGgtaagtaaccatggcttttttatctttgttattatataactatatgaagggcagacctagtg-tagtggttagagctgtctcactgagtcaccaggccatg

upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatacaagttcatcagctatcttgca-tgatggtttcttaacactgaatgattatattt--tgaactt---ctgtacag
|||||||| ||||| || || ||||||||||| |||||  | ||||| || || || || || ||||||||||| |||||| |||| |||||||||||||||||||  |   |  | | ||| |   |||| |   |||   ||||| |  |  |    | || | |   ||||| |    |  ||||
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatca-tccat-attgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag

upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgt-aatgaaat------------atacaagttcatcagctatcttgcatga--tggtttcttaacactgaatgattatattttgaacttctgtacag--------------------------------------------------------------------
|||||||| ||||| || || ||||||||||| |||||  |||| || || |||||||| |||||||| || ||||| |||||||| ||||| ||||||||| | |   ||            ||  |  ||||  |  |   ||   |||  |||    || ||  ||    ||||| |||     ||||  || |                                                                    
ATGTATACTGATCTGGCCACCATTTATGAACGTGCTGGACGAATCGAAGGCCGTAAAGGATCTATTACTCAGATTCCTATTCTAACTATGCCGAATGATGgtcagttgcatccttcctttgtcatcaagtttcagtatttgctttctttgaaatgggcattttactttgttatattatttttgctctttcttgactgcgtgcagtcttcgactgtggacttctccttgtctgtactaagcttcacctttgtggcatttcgtgcag

upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatacaagttcat-cagctatcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacag----------------------------------------------------------------------------------------------------------
||||| || |||||||| || ||||||||||| |||||  | |||||||| |||||||| |||||||| || || |||||| |||| |||||||| || ||||||   |    |||  || | | |   | ||| | |||     ||    | |   |  ||   ||| |  ||| |  || |                                                                                                          
ATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGGGCCGTAAAGGATCTATTACTCAGATCCCAATTTTAACTATGCCCAACGACGgtaattttagcctcaaactcttgctgaatttttgtaagattagcgctgccgattagct--tttcctttagttctttttgaccgcttacaagtgccagtcgccctactattttctttctgcatgaatgcctttcttttgagcctctaatcttcttctttttaatctcttttgtccctacgttctccgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452473|gb|BM953883.1|BM953883
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16283344|gb|BI945501.1|BI945501
EST:     CTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: CTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16283207|gb|BI945427.1|BI945427
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16279679|gb|BI943560.1|BI943560
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: gi|16278507|gb|BI942940.1|BI942940
EST:     GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG                         ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAAGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA