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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatcatcttttgctgttctttgctaatattttgtgcatttgtgtgtggtgagggggtggggaggtgggagggggggggggggggaggtcttgttatcctttttacctatcagcctctgtccactggcttattttttgctgttaatatgcttcag

Basic information

species Glycine max
transcript GLYMA10G42180.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597054|gb|DB977590.1|DB977590
EST:     GCTGACTTCCTTCGCCTGATAAGA-AAACAAC-ACAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTAC-GCGATGCCACAAGCAGTAACCGTCA
genomic: GCTGACTTCCTTCGCCTGATAA-ATGAAC--CTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTT-CTGCGATGCCACAAGCAGTAACCGTCA
EST: gi|15285661|gb|BI469552.1|BI469552
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|10709284|gb|BF009008.1|BF009008
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTNGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|12690109|gb|BG156445.1|BG156445
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|213596136|gb|DB977498.1|DB977498
EST:     AGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGAGTCTGCGATG-CACGAAGCAGTAACCGTCA
genomic: AGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCAC-AAGCAGTAACCGTCA
EST: gi|151401292|gb|EV271106.1|EV271106
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|24205755|gb|BU965008.1|BU965008
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|15663984|gb|BI701355.1|BI701355
EST:     CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: gi|10709685|gb|BF009409.1|BF009409
EST:     AGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG                         GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: AGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatcatcttttgctgttctttgctaatattttgtgcatttgtgtgtggtgagggggtggggaggtgggagggggggggggggggaggtcttgttatcctttttacctatcagcctctgtccactggcttattttttgctgttaatatgcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG