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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAAgtatgtttttaagattttgattgtttttgtcatcagttattccattatgcttgaatccttgattcctattgaagttgatagctctctaacttgaaatcta...

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 10
GAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAAgtatgtttttaagattttgattgtttttgtcatcagttatt-ccattatgcttgaatccttgattcctattgaagttgatagctctctaacttgaaatcta
| || |||||||||||| |||| ||| |||||||||| || ||||||||  | ||||||||  | ||||  ||||||||||| || || |||||| |||| |   |  ||||  ||   |       ||  |  || || | | |  |      |||  | |  |  ||   ||                   
GTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAgtaggtttgttcaaccttgagagtgcatacacatggtcctagccgttgtacatccaatgagaattt-tgtatattttttcag-------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 10
GAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAAgtatgtttt----taagattttgattgtttttgtcatcagttattccattatgcttgaatccttgattcctattgaagttgatagctctctaacttgaaatcta-
| || ||||| |||||||||||||||||||||||||| || | ||||||| | ||||||||| |||||| |||||| || || || || |||||||||| |     ||  | || | | |||  ||  | ||| ||    ||   ||  |||  |    | | |||    ||  |  || || |  ||  ||| |  
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgttgtgcatcaaagtatttactctttcagtt-ttagtaatat--ttcaactaaaattatcatgtgcaattttttttctt--ctttccattttttaatgtgg