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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag

Basic information

species Glycine max
transcript GLYMA10G40340.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag
|||||||| |||||||| | ||||||  |||| |||||  |||||||||||||||||||||| || |||||||| || || || || ||||| ||||||||| | ||   ||  ||  |||||  ||||| |||  ||      || ||   |||  |  || ||      |  | || |||||||
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaattt-ccaactcaactgatag-cttttgctt--atccttagtgtatcaattgagtatatataa-----atggttaatctgcag

upper sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattc-tgcag---------------------------------------------------------------------------
||||||||||| ||||||||||| ||||| || |||||||||||||| ||| |||| || ||||| ||| | || || || ||||| ||||||||||| |||||||| || ||   ||| | |||  |  | ||  ||   || || ||      || |     |      |   ||| ||  |||                                                                            
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagtt-ttcatcatcttaagatttctagatttctataa-atatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag

upper sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14740.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagt---tattaatgcacttgatattctt--------ttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag-------
|| |||||||| || |||||||||||||| || |||||||||||||| ||| |||| || ||||| ||| | || || || || || ||||||||||| |||||||   | ||  || |  ||  | |||         ||| |   || |  |||      | || ||||   |  ||  |  |  ||||   |         
TGCCAGTGCCCAGAGTGTAGCTGCAAGAACACATGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCATCAgtgagtatttttttttgaatatggaagtctaaagtttgattattcaaatagtgtttctcccacctgttttccaattgttattggttctatttgtcgaaatctag

upper sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag-----------------------------
||||||||||||||||| |||||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||      ||       |||| | || |      ||    ||   |  |  |||  | | |  ||  | | |  |                                  
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaa----acaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310294|gb|GE107656.1|GE107656
EST:     GCAGTGGGGATTTCTTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: GCAGTGGGGA--TC-TTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|6746932|gb|AW317388.1|AW317388
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208087431|gb|GD888515.1|GD888515
EST:     TAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: TAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|207771835|gb|GD745606.1|GD745606
EST:     CTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|207787491|gb|GD762810.1|GD762810
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTAGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208107586|gb|GD906535.1|GD906535
EST:     CACTTGCAGTGGGGATC-TTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208120192|gb|GD919301.1|GD919301
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|193352941|gb|FK315167.1|FK315167
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|10845475|gb|BF068594.1|BF068594
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA