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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGCAGCAACCTTCAGCTCTTCTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAAgtgtgtaggatcctgtagacttatggtttacttttccttggtgatatatttttcccctaaaatgtttttttttttgcttatagtagctacataaagcatttctttttcatgtttctactcaacaaattctgctcag

Basic information

species Glycine max
transcript GLYMA10G39540.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 10
GGACGCAGCAACCTTCAGCTCTTCTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAAgtgt---------gtaggatcctgtagacttatggtttacttttccttggtgatatatttttccc--ctaaaatgtttttttttttgcttatagtagc-tacataaagcatttctttttcatgt----ttctactcaacaaattctgctcag-
|| || || |||| |||||  || | |||||||||||| |||||  |||||||||| ||||||||||| || |||||||| || || || || |         | |   |  | |  | ||| |||     | | |||  |   ||||||  ||   ||| |   | |   ||  || ||||  || | |  ||    |||| ||   |    |    |||| ||  |  || | || | |  
GGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTTGCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGgttttacttacttgaaatgttatcttcatttagggtagtactgttctttatttcatatttaccctgactatagcatctaacttactgtttattttatcctgtatccctcattcctcccttgcctgctcttcttctggatgaaatatgttaaag

upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 10
GGACGCAGCAACCTTCAGCTCTTCTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAAgtgtg--taggatcctgtagacttatggtttacttttccttggtgatatatttttcccctaaaatgtttttttttttgcttatagtagctacataaagcatttctttttcatgtttctactcaacaaattctgctcag
|| |||||    |  || |  || || || ||||| ||||||||  |||||||||||||||||||||||||||||||||| || || || || |   |  | ||||||  ||||   |||| ||  || | |  | |  | | |||||| | ||||   |   |   |  ||| |||  || ||||||  ||  || || || | | |  |      | | || | ||
GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcctgtgaactt-cagttttctgatcat-gaagctcaagtattccccaagaatgacatgact---gtctat-gtaattaaataaag--ttatttatttatttatattttttggtgactatggtaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193364572|gb|FK330057.1|FK330057
EST:     ATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAA                         GGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTGCT
genomic: ATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAAgtgtgtagga ... ttctgctcagGGTGCTATCTTGACCCATGGAAACTTTATTGCAAGTGTTGCTGGGAGTACT