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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatcttaaactgagatggactattaatttaatctcatgtatctaaaattagcctttccgctgactgattatttaattcatacattacatatattgtatggaaaaaatacgtaatataaatttctgttatgtattgaattatgatag

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
TCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatcttaaactgagatggactattaatttaatctcatgtatctaaaattagcctttccgctgactgattatttaattcatacattacatatattgtatggaaaaaatacgtaatataaatttctgttatgtattgaattatgatag
||||||||||||||||||||| || || ||||| ||||||||||| || |||||| ||||||| || || |||||  | |||||  | || || || ||||||| |   | ||  |   ||    | |  ||| |   ||| |||  ||   | | | ||   |     ||||| || ||  || ||  |   | | |    ||  |  ||                                        
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatga-cttgaagttttcata---tttagattcatggtcaagtaattactgtcatctttcttg-----tgattgttaaaagcagac--tgtttctttgacttgagatcaa----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGG                         GATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
genomic: TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatct ... attatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGG                         GATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
genomic: TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatct ... attatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT