Sequence
atgc intronic sequence ATGC exonic sequenceAGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatatagtgattgcatctgatgcgtgttcttgcag
Basic information
species | Glycine max |
transcript | GLYMA10G37440.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G37440.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g43540.1 (Oryza sativa), 5'ss of exon 9
AGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatata-gtgattgcatc--tgatgcgtgttcttgcag
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GGAGGAGAAGCTTGAAGGCGATGCTGCATTGAACAAATTTTTCCGTGACATCTACAGTGATGCTGATGAAGACATGCGACGAGCAATGATGAAATCTTTTgtatgtctttct--ttagcacaattgatgaaatgtttataac--------tagtgaccttgctgacagaagtgcgt-ttagtaagtttgaactttgtatacttatacatcaacgatgtgcttgtttgcag
upper sequence: GLYMA10G37440.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G105019_T01 (Zea mays), 5'ss of exon 9
AGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatatagtgattgcatctgatgcgtgttcttgcag
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GGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTGACATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatgtttggcccagctaatactggatttggagcca-actgtattttatgtctatactcacg--tatccttgcccgtttctgcag-------------------------------------
upper sequence: GLYMA10G37440.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G149704_T02 (Zea mays), 5'ss of exon 9
AGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatatagtgattgcatctgatgcgtgttcttgcag
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GGAAGAAAAACTTGAAGGTGATGCTGCATTGAACAAGTTCTTCCGTGATATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGGACAAGTCATTCgtacgtgatcgttggcccagctaataacgcatttggaacca-actatattttatgtctatactcacgtaccct--tgctgttcctgcag--------------------------------------
upper sequence: GLYMA10G37440.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv16s0050g01510.t01 (Vitis vinifera), 5'ss of exon 9
AGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatatagtgattgcatctgatgc-gtgttcttgcag
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AGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGGACATATATAAAGATGCAGACGAAGACACAAGAAGGGCCATGCAAAAATCTTTTgtaagac------ttcaataccggagttacataaaatatcattctaa--ttgagtatgggattataaaagggaaattagcaaattaacggaaggtgacattgtttttcttggggctattttttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151402479|gb|EV272292.1|EV272292EST: TATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTT GTGGAGTCTAATGGAACAGTACTGTCTACAAACTGGAAAGAAGTGGGATCA
genomic: TATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagttttt ... gttcttgcagGTGGAGTCTAATGGAACAGTACTGTCTACAAACTGGAAAGAAGTGGGATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTgtgagtttttttgttttctatctatgatagttattctacaatgccaaattttggttccttattattggacatcaatactaatattttttgactatatagtgattgcatctgatgcgtgttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA